Stem-loop lus-MIR169a

Accession

MI0021145

Description

Linum usitatissimum lus-MIR169a precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

2 open access papers mention lus-MIR169a
(13 sentences)

Sequence

aggaccaggguguuacaugaaagaucagaacuuguuuggUAGCCAAGGAUGACUUGCCCAcauuucucugcugcuagcugcaucuuacuuacagaguuugucugggcagucuccuugguuaugcugacagguuaugaucucucauguuaugcccuuuguucu
(((((.(((((((.((((((.((((((.((((((((..(((((((((((.((((.(((((.((..(((((.(((.....))).........)))))...)).))))))))))))))))))))...)))))))).)))))).)))))).)))))))..)))))

Structure

     -c       u      a      g        -ug           U    U     c  -uu     --------c   u 
aggac  agggugu acauga agauca aacuuguu   gUAGCCAAGGA GACU GCCCA au   cucug         ugc a
|||||  ||||||| |||||| |||||| ||||||||   ||||||||||| |||| ||||| ||   |||||         ||| g
ucuug  ucccgua uguacu ucuagu uuggacag   uauugguuccu cuga cgggu ug   gagac         acg c
     uu       u      c      a        ucg           -    -     c  uuu     auucauucu   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR169a

• Accession: MIMAT0027125
• Description: Linum usitatissimum lus-miR169a mature miRNA
• Sequence: 40 - UAGCCAAGGAUGACUUGCCCA - 60
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161