Stem-loop lus-MIR164a

Accession

MI0021149

Description

Linum usitatissimum lus-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

2 open access papers mention lus-MIR164a
(3 sentences)

Sequence

uggugcgugugagcaggaUGGAGAAGCAGGGCACGUGCAuuacuaacucucccaccccccagcagcacuucaaccaagaagaaaaccguucugaguuaguuguucaugugcccaucuuccccaucaugauaccacugcaucg
.((((((.(((..((.(((((.((((..(((((((((.((.((((((((..................((((......))))...........)))))))).)).)))))))))..)))).))))).))....))))))))).

Structure

u      u   --ag  g     A    CA         C  u        ucccaccccccagcagca    aa 
 ggugcg gug    ca gaUGG GAAG  GGGCACGUG Au acuaacuc                  cuuc  c
 |||||| |||    || ||||| ||||  ||||||||| || ||||||||                  ||||   
 cuacgu cac    gu cuacc cuuc  cccguguac ug ugauugag                  gaag  c
g      -   caua  a     c    ua         u  u        -------ucuugccaaaa    aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR164a

• Accession: MIMAT0027129
• Description: Linum usitatissimum lus-miR164a mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161