miRBase entry: lus-MIR171b

Stem-loop lus-MIR171b


Accession
MI0021154
Description
Linum usitatissimum lus-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
3 open access papers mention lus-MIR171b
(6 sentences)

Sequence

cuuguuguauguauaaugaaaggcgccacugcgguauuggcccgguucacucagacacagcucgcuagcgcauauuuauauauguuUGAUUGAGCCGUGCCAAUAUCucaaugcaccuuucacucgaucgcaag
(((((.((.((.....(((((((.((...((.(((((((((.(((((((.(((((((..(((....))).............))))))).))))))).))))))))).))..)).)))))))..)))).)))))

Structure
     u  a  uauaa       c  cac  c         c       c       -----------ca   c 
cuugu gu ug     ugaaagg gc   ug gguauuggc cgguuca ucagaca             gcu g
||||| || ||     ||||||| ||   || ||||||||| ||||||| |||||||             |||  
gaacg ua gc     acuuucc cg   ac CUAUAACCG GCCGAGU AGUuugu             cga c
     c  -  ---uc       a  -ua  u         U       U       auauauuuauacg   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR171b

Accession MIMAT0027134
Description Linum usitatissimum lus-miR171b mature miRNA
Sequence 87 - UGAUUGAGCCGUGCCAAUAUC - 107
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161