miRBase entry: lus-MIR172a

Stem-loop lus-MIR172a


Accession
MI0021155
Description
Linum usitatissimum lus-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
1 open access papers mention lus-MIR172a
(1 sentences)

Sequence

agucguuguuugcuggcguagcaucaucaagauucacauuccgaacugggaucaugAGAAUCUUGAUGAUGCUGCAUuggccauauacgacu
((((((.....(((((.((((((((((((((((((.((((((......)))..))).)))))))))))))))))).))))).....))))))

Structure
      uguuu     c                  a   --   ga 
agucgu     gcugg guagcaucaucaagauuc cau  ucc  a
||||||     ||||| |||||||||||||||||| |||  |||   
ucagca     cgguU CGUCGUAGUAGUUCUAAG gua  agg  c
      uauac     A                  A   cu   gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR172a

Accession MIMAT0027135
Description Linum usitatissimum lus-miR172a mature miRNA
Sequence 57 - AGAAUCUUGAUGAUGCUGCAU - 77
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161