miRBase entry: lus-MIR394a

Stem-loop lus-MIR394a


Accession
MI0021161
Description
Linum usitatissimum lus-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
2 open access papers mention lus-MIR394a
(9 sentences)

Sequence

ggguuugucaaaggguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCccuacuacguacguacguacugaaaucuaucaaucucaacuaaggaggccaggugaggugaggugggcauacugccaacagaacucuguuggucucacuuuguaaaaccu
((((((..(((((.....((.(((((((((.((((((...((((((((((((.((((..((((....))))(((......))).((((.......))))...)))).)).))))))))))...))))))..))))))))).)).....)))))..))))))

Structure
      gu     gguuu  u         -a      UUC          -  c    -----------------------------ac    g 
ggguuu  caaag     cu acagaguuu  UUGGCA   UGUCCACCUC Cc uacu                               guac u
||||||  |||||     || |||||||||  ||||||   |||||||||| || ||||                               ||||  
uccaaa  guuuc     gg ugucucaag  aaccgu   acggguggag gg gugg                               caug a
      au     acucu  u         ac      cau          u  a    accggaggaaucaacucuaacuaucuaaagu    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR394a

Accession MIMAT0027141
Description Linum usitatissimum lus-miR394a mature miRNA
Sequence 32 - UUGGCAUUCUGUCCACCUCC - 51
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161