miRBase entry: lus-MIR164c

Stem-loop lus-MIR164c


Accession
MI0021162
Description
Linum usitatissimum lus-MIR164c precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
2 open access papers mention lus-MIR164c
(3 sentences)

Sequence

acaggugggcgugagcaugaUGGAGAAGCAGGGCACGUGCAuuacuaacucguggguuuugcuccggaucgaguuagugguucaugugcccaucuuccccaucgugaaaccguugcacuuuacucugu
..(((((((((....((((((((.((((..(((((((((.((((((((((((((((......))))...)))))))))))).)))))))))..)))).))))))))....)))).)))))........

Structure
------ac     -    ugag        A    CA         C            ---    uu 
        aggug ggcg    caugaUGG GAAG  GGGCACGUG Auuacuaacucg   uggg  u
        ||||| ||||    |||||||| ||||  ||||||||| ||||||||||||   ||||   
        uucac uugc    gugcuacc cuuc  cccguguac uggugauugagc   gccu  u
ugucucau     g    caaa        c    ua         u            uag    cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR164c

Accession MIMAT0027142
Description Linum usitatissimum lus-miR164c mature miRNA
Sequence 21 - UGGAGAAGCAGGGCACGUGCA - 41
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161