Stem-loop lus-MIR172c

Accession

MI0021164

Description

Linum usitatissimum lus-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

1 open access papers mention lus-MIR172c
(1 sentences)

Sequence

agucaauaucggcagaugcggcaucuucaagauucacaaacuuauccaagcccucccaugaccgaaccgaaucggucgucgguuggguuagguuuuauugAGAAUCUUGAUGAUGCUGCAUcggcagauauauuggcu
((((((((((.((.(((((((((((.(((((((((.(((......((.(((((..((((((((((......)))))))).))..))))).)).....))).))))))))).))))))))))).)).)))))..)))))

Structure

     --     g  a           u         a   acuuau  a     uc  -        ac 
aguca  auauc gc gaugcggcauc ucaagauuc caa      cc agccc  cc augaccga  c
|||||  ||||| || ||||||||||| ||||||||| |||      || |||||  || ||||||||   
ucggu  uauag cg cUACGUCGUAG AGUUCUAAG guu      gg uuggg  gg ugcuggcu  g
     ua     a  g           U         A   -auuuu  a     uu  c        aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR172c

• Accession: MIMAT0027144
• Description: Linum usitatissimum lus-miR172c mature miRNA
• Sequence: 101 - AGAAUCUUGAUGAUGCUGCAU - 121
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161