miRBase entry: lus-MIR398a

Stem-loop lus-MIR398a


Accession
MI0021167
Description
Linum usitatissimum lus-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention lus-MIR398a
(20 sentences)

Sequence

uuguggaugauucuuaccgggucgacuagagaacacacgaagagagguccgcaacgaaugagguguuucauuucacuuuccugUGUGUUCUCAGGUCGCCCCUGcaagauuuccuucacaa
.((((((.((.((((.(.(((.(((((.(((((((((((..(((((............(((((((...)))))))))))).))))))))))).))))).))).).))))..)).)))))).

Structure
u      u  -u    a c   u     a           aa     guccgcaacgaa       u 
 ugugga ga  ucuu c ggg cgacu gagaacacacg  gagag            ugaggug  
 |||||| ||  |||| | ||| ||||| |||||||||||  |||||            ||||||| u
 acacuu cu  agaa G CCC GCUGG CUCUUGUGUgu  cuuuc            acuuuac  
a      c  uu    c U   C     A           -c     ------------       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR398a

Accession MIMAT0027147
Description Linum usitatissimum lus-miR398a mature miRNA
Sequence 84 - UGUGUUCUCAGGUCGCCCCUG - 104
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161