Stem-loop lus-MIR399c

Accession

MI0021174

Description

Linum usitatissimum lus-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

1 open access papers mention lus-MIR399c
(18 sentences)

Sequence

guacuguugcaguugggaaauuacagggcaacuaucucuauuggcaggcagccaugcacuuagagacauacuuaacugucuaagugcaccgucUGCCAAAGGAGAUUUGCCCGGcgauuccucuacugcuuaucggagc
...(((..(((((.(((.((((.(.((((((..((((((.(((((((((.(...((((((((((.(..........).))))))))))).))))))))).)))))))))))).).)))).))).)))))....)))...

Structure

gua   --uu     u   a    a a      cu      a         a cca          g caua 
   cug    gcagu ggg aauu c gggcaa  aucucu uuggcaggc g   ugcacuuaga a    c
   |||    ||||| ||| |||| | ||||||  |||||| ||||||||| |   |||||||||| |     
   ggc    cguca cuc uuag G CCCGUU  UAGAGG AACCGUcug c   acgugaaucu u    u
cga   uauu     u   c    c G      --      A         c ---          g caau 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR399c

• Accession: MIMAT0027154
• Description: Linum usitatissimum lus-miR399c mature miRNA
• Sequence: 94 - UGCCAAAGGAGAUUUGCCCGG - 114
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161