miRBase entry: lus-MIR399d

Stem-loop lus-MIR399d


Accession
MI0021175
Description
Linum usitatissimum lus-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
1 open access papers mention lus-MIR399d
(18 sentences)

Sequence

gagcucugugugguugaggaauaacagggcaguccuccuuuggcggacugaaaucaugcuaauuggagaaaucaugcaugcaauacccuucugcuuUGCCAAAGGAGAAUUGCCCUGccauuucccucccaccaaaauccuc
......((.((((..(.((((...(((((((((.((((((((((((((.(((..(((((................)))))........))).).))))))))))))).)))))))))....)))))..))))))........

Structure
--gagcuc  u    uu a    -uaa         c             - u   ------au     uaauugg 
        ug gugg  g ggaa    cagggcagu cuccuuuggcgga c gaa        caugc       a
        || ||||  | ||||    ||||||||| ||||||||||||| | |||        |||||        
        ac cacc  c ccuu    GUCCCGUUA GAGGAAACCGUuu g cuu        guacg       g
cuccuaaa  -    cu -    uacc         A             c u   cccauaac     uacuaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR399d

Accession MIMAT0027155
Description Linum usitatissimum lus-miR399d mature miRNA
Sequence 97 - UGCCAAAGGAGAAUUGCCCUG - 117
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161