miRBase entry: lus-MIR399e

Stem-loop lus-MIR399e


Accession
MI0021176
Description
Linum usitatissimum lus-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
1 open access papers mention lus-MIR399e
(18 sentences)

Sequence

gcaacgaucuuguauggaugcauuacagggcaauuacucccuuggcagauagcuauaguacuagcuaaauugagcaaacaaguacaguaagcucacUGCCAAAGGAGAUUUGCCCGGcaauucaacccuauuacguacuagc
...(((.....(((.((.((.(((.(.((((((.(.((((.(((((((..((((((.(((((.(((......))).....))))).)).))))..))))))).))))).)))))).).))).)).)).)))..)))......

Structure
---gca   aucuu   u  a  c   a a      u a    c       au    -  a     ----a   aa 
      acg     gua gg ug auu c gggcaa u cucc uuggcag  agcu au guacu     gcu  a
      |||     ||| || || ||| | |||||| | |||| |||||||  |||| || |||||     |||   
      ugc     uau cc ac uaa G CCCGUU A GAGG AACCGUc  ucga ug cauga     cga  u
cgauca   ---au   c  a  u   c G      U -    A       ac    a  a     acaaa   gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR399e

Accession MIMAT0027156
Description Linum usitatissimum lus-miR399e mature miRNA
Sequence 97 - UGCCAAAGGAGAUUUGCCCGG - 117
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161