miRBase entry: lus-MIR399f

Stem-loop lus-MIR399f


Accession
MI0021177
Description
Linum usitatissimum lus-MIR399f precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
2 open access papers mention lus-MIR399f
(19 sentences)

Sequence

gggucugcuagcuagcugcaugaaugaaucacugggcuaauacuucuuuggcaguaguugaaaggcuaaguaguuggucaguugguuguuugcaccaauugccagacacggugccguuucaaacaaacUGCCAAAGGAGAUUUGCCCAGccuuucagcucaugcauacaaaagucaucaucccc
(((..((...(((...(((((((.((((...((((((.(((.(((((((((((((..(((((((((...((..((((.((((((((.......))))))))))))..))...))).))))))....)))))))))))))))).))))))...))))..)))))))......)))...)).))).

Structure
-   uc  cua   ---agc       -a    uca      u   a             --ag      -   uaa  ag    u        ug 
 ggg  ug   gcu      ugcauga  ugaa   cugggc aau cuucuuuggcagu    uugaaa ggc   gu  uugg caguuggu  u
 |||  ||   |||      |||||||  ||||   |||||| ||| |||||||||||||    |||||| |||   ||  |||| ||||||||  u
 ccc  ac   uga      acguacu  acuu   GACCCG UUA GAGGAAACCGUca    aacuuu ccg   ca  gacc guuaacca  u
c   -u  uac   aaacau       cg    ucc      U   -             aaca      g   ugg  ca    -        cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR399f

Accession MIMAT0027157
Description Linum usitatissimum lus-miR399f mature miRNA
Sequence 129 - UGCCAAAGGAGAUUUGCCCAG - 149
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161