miRBase entry: lus-MIR167d

Stem-loop lus-MIR167d


Accession
MI0021179
Description
Linum usitatissimum lus-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention lus-MIR167d
(5 sentences)

Sequence

cguggagcaccagcaguUGAAGCUGCCAGCAUGAUCUAaccuuccuuugcauauauauguacaugugcaugaucgaucaucaaaguagguaagaggaggaucgauaaggaaggucugagaucaugugacaguuucaccuguugaugcccuucacg
(((((((((.((((((.((((((((...(((((((((.((((((((((((((((........)))))))..(((((((.((..............)).))))))))))))))))...)))))))))..)))))))).)))))).)))..))))))

Structure
      --   c      u        CCA         --A         ugcauauauauguacaugugcaug       a  aaagua 
cgugga  gca cagcag UGAAGCUG   GCAUGAUCU   accuuccuu                        aucgauc uc      g
||||||  ||| |||||| ||||||||   |||||||||   |||||||||                        ||||||| ||       
gcacuu  cgu guuguc acuuugac   uguacuaga   uggaaggaa                        uagcuag ag      g
      cc   a      c        -ag         guc         ------------------------       g  gagaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR167d

Accession MIMAT0027159
Description Linum usitatissimum lus-miR167d mature miRNA
Sequence 18 - UGAAGCUGCCAGCAUGAUCUA - 38
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161