miRBase entry: lus-MIR398b

Stem-loop lus-MIR398b


Accession
MI0021180
Description
Linum usitatissimum lus-MIR398b precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention lus-MIR398b
(13 sentences)

Sequence

ucaugucucUGUGUUCUCAGGUCACCCCUcugggucaccuuauuucuacauuuccaucucaaauucuauuuucuuauauuuauucgggagcgacguugagacacauacguucucgaaagauaucuaaacaaauaugguuagauccagaggggugcaaccugaaaacacagacgacgga
((.((((((((((((.(((((((((((((((((((((((.(((((...............(((......)))...((((((.(((((((((((.((......)).).))))))))))))))))......))))).)))..))))))))))))))..)))))).)))))))).))))))

Structure
  a    -        C      --              --   u     cuacauuuccaucucaaauucuauuuucuu      a          - c  ug 
uc uguc ucUGUGUU UCAGGU  CACCCCUcuggguc  acc uauuu                              auauuu uucgggagcg a gu  a
|| |||| |||||||| ||||||  ||||||||||||||  ||| |||||                              |||||| |||||||||| | ||   
ag gcag agacacaa agucca  guggggagaccuag  ugg auaaa                              uauaga aagcucuugc u ca  g
  -    c        a      ac              au   u     ------------------------caaauc      -          a a  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR398b

Accession MIMAT0027160
Description Linum usitatissimum lus-miR398b mature miRNA
Sequence 10 - UGUGUUCUCAGGUCACCCCU - 29
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161