miRBase entry: lus-MIR530a

Stem-loop lus-MIR530a


Accession
MI0021182
Description
Linum usitatissimum lus-MIR530a precursor miRNA
Gene family
MIPF0000521; MIR530

Literature search
1 open access papers mention lus-MIR530a
(5 sentences)

Sequence

agccaauuuguugccuuugccUGCAUUUGCACCUGCACCUUauaaauauguacaauguaagaggugcagaggcaagugcaagugaaugccauuuuggcu
((((((..((..((.(((((.(((((((((..(((((((((....((((.....))))..)))))))))..))))))))).))))).))))..))))))

Structure
      uu  uu  c     c         AC         auaa    g 
agccaa  ug  gc uuugc UGCAUUUGC  CUGCACCUU    auau u
||||||  ||  || ||||| |||||||||  |||||||||    |||| a
ucgguu  ac  cg aagug acgugaacg  gacguggag    ugua c
      uu  --  u     a         ga         --aa    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR530a

Accession MIMAT0027162
Description Linum usitatissimum lus-miR530a mature miRNA
Sequence 22 - UGCAUUUGCACCUGCACCUU - 41
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161