miRBase entry: lus-MIR390a

Stem-loop lus-MIR390a


Accession
MI0021187
Description
Linum usitatissimum lus-MIR390a precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
1 open access papers mention lus-MIR390a
(22 sentences)

Sequence

gauucagagaagauucaaaguauaggaagaaucuguaAAGCUCAGGAGGGAUAGCGCCauuggauccugaccuuacacguauggauucauggauucuggcgcuauccauccugaguuucauggcuucuucuugcucucccaacacccauucuucuucuucuuauc
(((...(((((((.....((..(((((((((.((((.((((((((((.(((((((((((..(((((((((((..........))..))).))))))))))))))))).)))))))))).)))).)))))))))..))...............)))))))...)))

Structure
   uca       ----------uucaa  ua         u    a          G           uu      -   --  uuac 
gau   gagaaga               ag  uaggaagaa cugu AAGCUCAGGA GGAUAGCGCCa  ggaucc uga  cc    a
|||   |||||||               ||  ||||||||| |||| |||||||||| |||||||||||  |||||| |||  ||     
cua   uucuucu               uc  guucuucuu ggua uuugaguccu ccuaucgcggu  cuuagg acu  gg    c
   uuc       ucuuacccacaaccc  uc         c    c          a           --      u   ua  uaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR390a

Accession MIMAT0027167
Description Linum usitatissimum lus-miR390a mature miRNA
Sequence 38 - AAGCUCAGGAGGGAUAGCGCC - 58
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161