miRBase entry: lus-MIR167f

Stem-loop lus-MIR167f


Accession
MI0021195
Description
Linum usitatissimum lus-MIR167f precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention lus-MIR167f
(5 sentences)

Sequence

gucuguguuguguuggagucagagguUGAAGCUGCCAGCAUGAUCUGgguuuucugaugaaggaauucaggucaucugacagcuucacucacucacuuccaucaccuucuuuaacucgcuggcaggggc
((((.(((((((.((((((.((.((.((((((((.(((.(((((((((((((.((.....)))))))))))))))))).)))))))).)).)).)).)))).)))...............)))).))))

Structure
    g    ---------------   u    -  c  a  u        C   C             u  g 
gucu uguu               gug ugga gu ag gg UGAAGCUG CAG AUGAUCUGgguuu cu a
|||| ||||               ||| |||| || || || |||||||| ||| ||||||||||||| || u
cggg acgg               cac accu ca uc cu acuucgac guc uacuggacuuaag ga g
    g    ucgcucaauuucuuc   u    u  c  a  c        a   -             -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR167f

Accession MIMAT0027175
Description Linum usitatissimum lus-miR167f mature miRNA
Sequence 27 - UGAAGCUGCCAGCAUGAUCUG - 47
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161