miRBase entry: lus-MIR156i

Stem-loop lus-MIR156i


Accession
MI0021198
Description
Linum usitatissimum lus-MIR156i precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
3 open access papers mention lus-MIR156i
(7 sentences)

Sequence

auaugaaggaaagagguggauuuggauauauugguugUUGACAGAAGAUAGAGAGCACagaugaucugggaugucucgaaccauauauauauauaucugcaucuccauccuuugugcucucuagucuucugucaucaccuucauccauccuagcuuucuuuugugu
(((((((((((((....(((..(((((.....(((.(.(((((((((((((((((((((((.(((..(((((((...((...((((....)))).)).))))))).))).)))))))))))).))))))))))).))))...))))))))...)))))))))))))

Structure
             aggu   uu     auauu   u U           -            u   cu       cuc  acc    a 
auaugaaggaaag    gga  uggau     ggu g UGACAGAAGAU AGAGAGCACaga gau  gggaugu   ga   auau u
|||||||||||||    |||  |||||     ||| | ||||||||||| |||||||||||| |||  |||||||   ||   ||||  
uguguuuucuuuc    ccu  accua     cca c acugucuucug ucucucguguuu cua  cucuacg   cu   uaua a
             -gau   --     --cuu   - u           a            c   -c       --u  --a    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR156i

Accession MIMAT0027178
Description Linum usitatissimum lus-miR156i mature miRNA
Sequence 38 - UUGACAGAAGAUAGAGAGCAC - 58
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161