Stem-loop lus-MIR156d

Accession

MI0021200

Description

Linum usitatissimum lus-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

3 open access papers mention lus-MIR156d
(6 sentences)

Sequence

guuuuuguguagauacauacauacauguauUGACAGAAGAAAGAGAGCACaacugaacauccccagggaaauggccuguguuucuucagccuuuugugcucucuucuucuucugucaauaacugcuguaaauucauaccaaauac
((.((((.(((((....((((..((..((((((((((((((((((((((((((((((.(..(.((((.......)))).)..).)))))....)))))))))))..))))))))))))))..)).))))...)).))))))).))

Structure

  u    u   -  uaca    ua  ug              --           ----     c uc c    ga 
gu uuug gua ga    uaca  ca  uauUGACAGAAGAA  AGAGAGCACaa    cugaa a  c cagg  a
|| |||| ||| ||    ||||  ||  ||||||||||||||  |||||||||||    ||||| |  | ||||  a
ca aaac cau cu    augu  gu  auaacugucuucuu  ucucucguguu    gacuu u  g gucc  u
  u    -   a  -uaa    -c  ca              cu           uucc     c uu u    gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR156d

• Accession: MIMAT0027180
• Description: Linum usitatissimum lus-miR156d mature miRNA
• Sequence: 31 - UGACAGAAGAAAGAGAGCAC - 50
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161