Stem-loop lus-MIR399g

Accession

MI0021208

Description

Linum usitatissimum lus-MIR399g precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

2 open access papers mention lus-MIR399g
(19 sentences)

Sequence

guugaaaagaggguauugaaagcaucugcaugaaugaaucacugggcuaauacucuuuuggcaguaguaguugaaaaaggcuaaguaguggucuuuugguuguuugcaccaauuuccguguacggugccguuucaagcaaacUGCCAAAGGAGAUUUGCCCAGcuuuucagcuagcucaugcauacaaaguuaucaucucuugcaac
((((..((((((....(((.......(((((((.((((...((((((.(((.(((((((((((((.....((((((..(((...(((.(((....(((((.......)))))...)))..)))...))).))))))....)))))))))))))))).))))))...))))......))))))).......)))...)))))).))))

Structure

    aa      guau   aagcauc       -----a    uca      u   a             aguag      aa   uaa   -g   ucuu     ug 
guug  aagagg    uga       ugcauga      ugaa   cugggc aau cucuuuuggcagu     uugaaa  ggc   gua  ugg    uuggu  u
||||  ||||||    |||       |||||||      ||||   |||||| ||| |||||||||||||     ||||||  |||   |||  |||    |||||  u
caac  uucucu    auu       acguacu      acuu   GACCCG UUA GAGGAAACCGUca     aacuuu  ccg   cau  gcc    aacca  u
    -g      -acu   gaaacau       cgaucg    uuc      U   -             -aacg      -g   ugg   gu   -uuu     cg 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR399g

• Accession: MIMAT0027188
• Description: Linum usitatissimum lus-miR399g mature miRNA
• Sequence: 143 - UGCCAAAGGAGAUUUGCCCAG - 163
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161