Stem-loop lus-MIR160e

Accession

MI0021209

Description

Linum usitatissimum lus-MIR160e precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention lus-MIR160e
(6 sentences)

Sequence

ggauggaugaugaacugugcaugUGCCUGGCUCCCUGUAUGCCAuucgcagagcuccaacggauucauccauggccuccguggauggcguaugaggagccaugcauauaucuaccuaccuuuucaucucaucaucccuuucc
(((.(((((((((..((...((((((.(((((((.((((((((((((((.(((..(((..(((....))).))).))).)))))))))))))).))))))).))))))...............))..)))))))))...)))

Structure

   --u         ac  ------------ugc      C       C              a   cu   ac   u 
gga   ggaugauga  ug               augUGC UGGCUCC UGUAUGCCAuucgc gag  cca  gga u
|||   |||||||||  ||               |||||| ||||||| |||||||||||||| |||  |||  |||  
ccu   ccuacuacu  ac               uauacg accgagg guaugcgguaggug cuc  ggu  ccu c
   uuc         cu  uuuuccauccaucua      u       a              c   -c   -a   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160e

• Accession: MIMAT0027189
• Description: Linum usitatissimum lus-miR160e mature miRNA
• Sequence: 24 - UGCCUGGCUCCCUGUAUGCCA - 44
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161