miRBase entry: lus-MIR394b

Stem-loop lus-MIR394b


Accession
MI0021214
Description
Linum usitatissimum lus-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
2 open access papers mention lus-MIR394b
(9 sentences)

Sequence

gguuugucaaaggguuucucacagaguucaUUGGCAUUCUGUCCACCUCCcuacggaaauccgcccaugguuacuaaggagguguggugaggugggcauacugccaacagagcucuguuggucucacuuuguaaaaccuuccugauauacc
(((((..(((((.....((.(((((((((.((((((...((((((((((.(((((....((((((...)))......)))..))))).))))))))))...))))))..))))))))).)).....)))))..))))).............

Structure
-------------     gu     gguuu  c         -a      UUC          C     gaaa   ------   c 
             gguuu  caaag     cu acagaguuc  UUGGCA   UGUCCACCUC cuacg    ucc      gcc  
             |||||  |||||     || |||||||||  ||||||   |||||||||| |||||    |||      ||| a
             ccaaa  guuuc     gg ugucucgag  aaccgu   acggguggag ggugu    agg      ugg  
ccauauaguccuu     au     acucu  u         ac      cau          u     --gg   aaucau   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR394b

Accession MIMAT0027194
Description Linum usitatissimum lus-miR394b mature miRNA
Sequence 31 - UUGGCAUUCUGUCCACCUCC - 50
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161