miRBase entry: lus-MIR169g

Stem-loop lus-MIR169g


Accession
MI0021216
Description
Linum usitatissimum lus-MIR169g precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
2 open access papers mention lus-MIR169g
(12 sentences)

Sequence

gccgucaauguaaaagggagaaauguaaugugCAGCCAAGGAUGACUUGCCGAucgacccgcgaacccaauuugcuccgggcuuaucgaucgauugauauugauggaucggcaaguugguccuuggcuacaucuucuuuuuucccuucaucucauccuuggc
((((...(((...((((((((((.(.((.(((.((((((((((.(((((((((((..((((.((...........)))))).......((((((....)))))).)))))))))))..)))))))))).))).))).)))))))))).....)))...))))

Structure
    uca   --uaa          u u  u   C          -G           ----------------------ga    c  accc 
gccg   aug     aagggagaaa g aa gug AGCCAAGGAU  ACUUGCCGAuc                        cccg ga    a
||||   |||     |||||||||| | || ||| ||||||||||  |||||||||||                        |||| ||    a
cggu   uac     uucccuuuuu c uu uac ucgguuccug  ugaacggcuag                        gggc cu    u
    ucc   ucuac          u -  c   a          gu           guaguuauaguuagcuagcuauuc    -  cguu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR169g

Accession MIMAT0027196
Description Linum usitatissimum lus-miR169g mature miRNA
Sequence 33 - CAGCCAAGGAUGACUUGCCGA - 53
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161