Stem-loop lus-MIR160g

Accession

MI0021222

Description

Linum usitatissimum lus-MIR160g precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention lus-MIR160g
(5 sentences)

Sequence

uuugguguuugaacggaaagcgugguccUGCCUGGCUCCCUGGAUGCCAucugagcagcuuuccaaaagaguguuuggaaaccuuccuaguuggcaugagggacgccaugcaggccguccauucauuuuccucaucuauugag
...((....((((.(((.....(((.(((((.(((((((((..((((((.(((.(.((.((((((((......)))))))).)).).))).)))))).))))).)))).))))))))))).))))....))(((.....))).

Structure

---------uuu  uguu    c   aagcg   u     C    -     GG      u   a c  c        ag 
            gg    ugaa gga     ugg ccUGC UGGC UCCCU  AUGCCA cug g ag uuuccaaa  a
            ||    |||| |||     ||| ||||| |||| |||||  |||||| ||| | || ||||||||   
            cc    acuu ccu     gcc ggacg accg aggga  uacggu gau c uc aaagguuu  g
gaguuaucuacu  uuuu    a   -----   -     u    c     -g      u   c u  c        gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160g

• Accession: MIMAT0027202
• Description: Linum usitatissimum lus-miR160g mature miRNA
• Sequence: 29 - UGCCUGGCUCCCUGGAUGCCA - 49
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161