Stem-loop lus-MIR168b

Accession

MI0021226

Description

Linum usitatissimum lus-MIR168b precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

3 open access papers mention lus-MIR168b
(10 sentences)

Sequence

uacuugcgcucucuaauUCGCUUGGUGCAGGUCGGGAAcuaauugcuucucguccccuagauuugccgacgccaucuucucugccccguucucuuccgcugagauaugguggcugucgucgucaaggguagagcgaauuagaucccgccuugcaucaacugaaucggauaccgcagua
((((.(((...(((.(((((.((((((((((.(((((.((((((....(((...((((.(((..(.((((((((((.((((.((.............)).))))...)))))).)))).)))).))))..)))..)))))).))))).)))))))))).))))).)))...)))))))

Structure

    u   cuc   a     C          U     A      gcuu   guc    a   uu c    -      --u    u  cccgu 
uacu gcg   ucu auUCG UUGGUGCAGG CGGGA cuaauu    cuc   cccu gau  g cgac gccauc   ucuc gc     u
|||| |||   ||| ||||| |||||||||| ||||| ||||||    |||   |||| |||  | |||| ||||||   |||| ||     c
auga cgc   agg uaagu aacuacguuc gcccu gauuaa    gag   ggga cug  c gcug cggugg   agag cg     u
    -   cau   c     c          c     a      --gc   -au    a   -- u    u      uau    u  ccuuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR168b

• Accession: MIMAT0027206
• Description: Linum usitatissimum lus-miR168b mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAA - 38
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161