Stem-loop lus-MIR171h

Accession

MI0021239

Description

Linum usitatissimum lus-MIR171h precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

3 open access papers mention lus-MIR171h
(6 sentences)

Sequence

gggccguuggagaaaguagacacgacgugguauugguugcggcucgucgaucucggacggcuuugaccgucgcuccgAUGAGCCGAACCAAUAUCACUcuuguaugcuucuuuccguucguuuucc
(((.((.(((((((((((.(((.((.((((((((((((.((((((((((......(((((......)))))....)))))))))))))))))))))))).))).))))).))))))..))...)))

Structure

   --c  -u      -     g   c  c            g          aucucg     cu 
ggg   cg  uggaga aagua aca ga gugguauugguu cggcucgucg      gacgg  u
|||   ||  |||||| ||||| ||| || |||||||||||| ||||||||||      |||||   
ccu   gc  gccuuu uucgu ugu cU CACUAUAACCAA GCCGAGUAgc      cugcc  u
   uuu  uu      c     a   u  -            -          --cucg     ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR171h

• Accession: MIMAT0027219
• Description: Linum usitatissimum lus-miR171h mature miRNA
• Sequence: 78 - AUGAGCCGAACCAAUAUCACU - 98
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161