miRBase entry: lus-MIR828a

Stem-loop lus-MIR828a


Accession
MI0021240
Description
Linum usitatissimum lus-MIR828a precursor miRNA
Gene family
MIPF0000544; MIR828


Sequence

guuguuaguagaugaaucaccucuugugguaaacguuUCUUGCUCAAAUGAGUGUUCCAaaaccagcaagcgauggagcaguucuggguucaaauacuccaucuguuguuugcaucugagaugcucauuugggcaagcaguguuucacaaagaggugucuguugauuuc
...(((((((((.....((((((((((((..((((((.((((((((((((((((((.((......((((((((((((.......(((((......)).)))))))))))))))...)).)))))))))))))))))).)))))))))).)))))))))))))))))...

Structure
guu         ugaau        -    ua      U                  C  aaacca            gcaguuc   -  uc 
   guuaguaga     caccucuu gugg  aacguu CUUGCUCAAAUGAGUGUU CA      gcaagcgaugga       ugg gu  a
   |||||||||     |||||||| ||||  |||||| |||||||||||||||||| ||      ||||||||||||       ||| ||   
   uaguugucu     guggagaa cacu  uuguga gaacggguuuacucguag gu      cguuuguugucu       acc ca  a
cuu         -----        a    --      c                  a  ---cua            -------   u  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR828a

Accession MIMAT0027220
Description Linum usitatissimum lus-miR828a mature miRNA
Sequence 38 - UCUUGCUCAAAUGAGUGUUCCA - 59
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161