miRBase entry: lus-MIR160i

Stem-loop lus-MIR160i


Accession
MI0021242
Description
Linum usitatissimum lus-MIR160i precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
2 open access papers mention lus-MIR160i
(6 sentences)

Sequence

uaaaugugacggguuaUGCCUGGCUCCCUGUAUGCCAccgacaacccuuccagucuuuuuguuugauugauaguugucguuggcguacacggaaucaagcauaccuauuucuuuua
((((.(.((.((((.((((.(((.(((.(((((((((.(((((((.....(((((.........)))))...))))))).))))))))).))).))).)))))))).)).).))))

Structure
    u u  c    u    C   C   C         c       ccuuc     uuu 
uaaa g ga gggu aUGC UGG UCC UGUAUGCCA cgacaac     caguc   u
|||| | || |||| |||| ||| ||| ||||||||| |||||||     |||||   u
auuu c uu ucca uacg acu agg acaugcggu gcuguug     guuag   g
    u u  a    -    a   a   c         u       --aua     uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR160i

Accession MIMAT0027222
Description Linum usitatissimum lus-miR160i mature miRNA
Sequence 17 - UGCCUGGCUCCCUGUAUGCCA - 37
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161