Stem-loop lus-MIR160j

Accession

MI0021245

Description

Linum usitatissimum lus-MIR160j precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention lus-MIR160j
(6 sentences)

Sequence

gaauugggaucuaagauuauaggauaUGCCUGGCUCCCUGUAUGCCAucgaaaacccuuccaauuacuuacuggauugguaguuguuguuggcguacacggaaucaagcauaccucuuucuuuuaaaccauuuuc
(((.(((.....((((....(((.(((((.(((.(((.(((((((((.(((.(((....((((((........))))))..))).))).))))))))).))).))).))))))))...)))).....))).))).

Structure

-   u   gaucu    uuau   a     C   C   C         u   a   ccuu      acu 
 gaa ugg     aaga    agg uaUGC UGG UCC UGUAUGCCA cga aac    ccaauu   u
 ||| |||     ||||    ||| ||||| ||| ||| ||||||||| ||| |||    ||||||    
 uuu acc     uucu    ucc auacg acu agg acaugcggu guu uug    gguuag   a
c   u   aaauu    -uuc   -     a   a   c         u   g   --au      guc 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160j

• Accession: MIMAT0027225
• Description: Linum usitatissimum lus-miR160j mature miRNA
• Sequence: 27 - UGCCUGGCUCCCUGUAUGCCA - 47
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161