miRBase entry: lus-MIR172h

Stem-loop lus-MIR172h


Accession
MI0021248
Description
Linum usitatissimum lus-MIR172h precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
1 open access papers mention lus-MIR172h
(1 sentences)

Sequence

auggaaaccaacagucauuggucgcaggugcagcaucaucaagauucacaugcauuauauacagagaguuaaaucgaauuuaaaccuacugacuaccacaaaagcaaggcauaguuacauaacaucuggaaaagaggcugugucuuguguuuugucuuugaguagguuugaaucgugauucuauuacgguggcuagugAGAAUCUUGAUGAUGCUGCAUcagcgguauaugacuuaauuagcuucau
(((((.......((((((...((((.(((((((((((((((((((((.(((...((((......(((((((...(((.((((((((((((.(.....(((((((((((((((((((........(((.....)))))))))))))))).))))))...).))))))))))))))))))))))......))))...))).))))))))))))))))))))).))))...))))))........)))))

Structure
     -aaccaac      ugg    a                     a   gca    auacag       aau   a            g cuacc      -             acauaaca   g 
augga        agucau   ucgc ggugcagcaucaucaagauuc cau   uuau      agaguua   cga uuuaaaccuacu a     acaaaa gcaaggcauaguu        ucu g
|||||        ||||||   |||| ||||||||||||||||||||| |||   ||||      |||||||   ||| |||||||||||| |     |||||| |||||||||||||        ||| a
uacuu        ucagua   ggcg cUACGUCGUAGUAGUUCUAAG gug   ggug      ucuuagu   gcu aaguuuggauga u     uguuuu uguucugugucgg        aga a
     cgauuaau      uau    a                     A   auc    gcauua       ---   -            g --uuc      g             --------   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR172h

Accession MIMAT0027228
Description Linum usitatissimum lus-miR172h mature miRNA
Sequence 199 - AGAAUCUUGAUGAUGCUGCAU - 219
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161