miRBase entry: lus-MIR393c

Stem-loop lus-MIR393c


Accession
MI0021249
Description
Linum usitatissimum lus-MIR393c precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention lus-MIR393c
(23 sentences)

Sequence

aagaauugaaagaaguugguuuccugcaacuagaggaggcaUCCAAAGGGAUCGCAUUGAUCccagcuaccuaccugccuaaccaaauucacagucuuggaucaugcuaucccuuuggauuucuccuuugguagcuuuggguuguguguuuuucucucaacucuu
((((.((((.(((((.......(((((.(((((((((((.((((((((((((.((((.(((((.((((.......((......)).......)).)).))))))))).)))))))))))).))))))))))).))...))).........))))).)))).))))

Structure
    a    a     --uugguuu   ---  a           c            C    U     c  -  accuacc  cc 
aaga uuga agaag         ccu   gc acuagaggagg aUCCAAAGGGAU GCAU GAUCc ag cu       ug  u
|||| |||| |||||         |||   || ||||||||||| |||||||||||| |||| ||||| || ||       ||   
uucu aacu ucuuu         ggg   cg ugguuuccucu uagguuucccua cgua cuagg uc ga       ac  a
    c    c     uuguguguu   uuu  a           u            u    -     u  u  cacuuaa  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR393c

Accession MIMAT0027229
Description Linum usitatissimum lus-miR393c mature miRNA
Sequence 42 - UCCAAAGGGAUCGCAUUGAUC - 62
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161