miRBase entry: lus-MIR166h

Stem-loop lus-MIR166h


Accession
MI0021251
Description
Linum usitatissimum lus-MIR166h precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention lus-MIR166h
(4 sentences)

Sequence

gaaucguaaagaaggcugggagcuuuuuaauaucuuuugaggggaauguugucuggcucgaagccgcuauuaacaauggccgaugagaaauucggcagauagguuuagcgacuUCGGACCAGGCUUCAUUCCCCccaauugcuuugcuccaguucccucuaauuauucccgaucuggacgauuc
(((((((..(((.((..(((((((.........(..(((.((((((((..((((((.((((((.(((((.........(((((........))))).........))))).)))))).))))))..)))))))).)))..).........)))))))...........))..)))..)))))))

Structure
       aa   -a  ---------cu       uuuuaauau uu   a        uu      c      c     uuaacaaug     uga 
gaaucgu  aga  gg           gggagcu         c  uug ggggaaug  gucugg ucgaag cgcua         gccga   g
|||||||  |||  ||           |||||||         |  ||| ||||||||  |||||| |||||| |||||         |||||    
cuuagca  ucu  cc           cccuuga         g  aac CCCCUUAC  CGGACC GGCUuc gcgau         cggcu   a
       gg   ag  cuuauuaaucu       ccucguuuc uu   c        UU      A      a     uuggauaga     uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR166h

Accession MIMAT0027231
Description Linum usitatissimum lus-miR166h mature miRNA
Sequence 114 - UCGGACCAGGCUUCAUUCCCC - 134
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161