miRBase entry: lus-MIR393d

Stem-loop lus-MIR393d


Accession
MI0021252
Description
Linum usitatissimum lus-MIR393d precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention lus-MIR393d
(23 sentences)

Sequence

cuucuccaucuguucuucgucagcuuugauuagugcaguuugagaguUCCAAAGGGAUCGCAUUGAUCuaaucaugaugaugauauauauaucuauauaucuuccaccaguuaguuaauuguuagaucaugcgaucccuuucgaauucuccaucucugccucuaaacuacauacccagcuaagaagcuagcuagcagcagauuauauacugguaaag
(((..(((((((((((..((.((((((..(((((((((...((((((((.(((((((((((((.((((((((..((((((.((((((((....)))))))).)).........))))...))))))))))))))))))))).)))))))).....))))..................))))))))))).)).)).))))))........)))..)))

Structure
   cu   --------      -  uc  c      ga     ------------------    --uuu        C             U        -ca    ---------  u        u 
cuu  cca        ucuguu cu  gu agcuuu  uuagu                  gcag     gagaguUC AAAGGGAUCGCAU GAUCuaau   ugau         ga gauauaua a
|||  |||        |||||| ||  || ||||||  |||||                  ||||     |||||||| ||||||||||||| ||||||||   ||||         || ||||||||  
gaa  ggu        agacga ga  cg ucgaag  aaucg                  cguc     cucuuaag uuucccuagcgua cuagauug   auug         cu cuauauau u
   au   cauauauu      c  -u  a      --     acccauacaucaaaucuc    ucuac        c             -        uua    auugaccac  u        c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR393d

Accession MIMAT0027232
Description Linum usitatissimum lus-miR393d mature miRNA
Sequence 48 - UCCAAAGGGAUCGCAUUGAUC - 68
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161