miRBase entry: ptr-mir-6128

Stem-loop ptr-mir-6128


Accession
MI0021262
Description
Pan troglodytes ptr-mir-6128 precursor miRNA
Gene family
MIPF0001442; mir-6128


Sequence

aagaagcuuguagauuuuucucccuuacuaucuagaauuauaggacuucaguccaugauuuggaaaaauuACUGGAAUUGGAGUCAAAAauaauuugaaaauuaggaau
...........(((....))).(((.........(((((((..((((((((((((((((((....)))))).))).)))))))))....))))))).......)))...

Structure
aagaagcuuguagauuuuucuc   uacuaucua       --ag         -   -      g 
                      ccu         gaauuau    gacuucagu cca ugauuu g
                      |||         |||||||    ||||||||| ||| ||||||  
                      gga         uuuaaua    CUGAGGUUA GGU Auuaaa a
-------------------uaa   --uuaaaag       AAAA         A   C      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr11: 56479900-56480008 [+]

Database links

Mature ptr-miR-6128

Accession MIMAT0024601
Description Pan troglodytes ptr-miR-6128 mature miRNA
Sequence 71 - ACUGGAAUUGGAGUCAAAA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22454130
    Transcription factors are targeted by differentially expressed miRNAs in primates
    "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
    "Genome Biol Evol (2012) 4:552-564