Stem-loop ptr-mir-378j

Accession

MI0021263

Description

Pan troglodytes ptr-mir-378j precursor miRNA

Gene family

MIPF0001463; mir-378_2

Sequence

augcagugagugggggaggaACUGGAUUUGGAGCCAGAAgaacugguucuaauaccuacuucccuguguagaguugggauuugggauuauaugaguuaauauacaccaa
..((..((....(((((((....((..((((((((((.....))))))))))..))..)))))))...))..))......((((...(((((......)))))..))))

Structure

---------------------------------au  ag  agug       aACU  AU          A 
                                   gc  ug    ggggagg    GG  UUGGAGCCAG A
                                   ||  ||    |||||||    ||  |||||||||| g
                                   ug  au    ucccuuc    cc  aaucuugguc a
aaccacauauaauugaguauauuaggguuuagggu  ag  -gug       --au  au          a 

Annotation confidence Not enough data

Genome context

chr17: 19843101-19843209 [+]

Mature ptr-miR-378j

• Accession: MIMAT0024602
• Description: Pan troglodytes ptr-miR-378j mature miRNA
• Sequence: 21 - ACUGGAUUUGGAGCCAGAA - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22454130
   Transcription factors are targeted by differentially expressed miRNAs in primates
   "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
   "Genome Biol Evol (2012) 4:552-564