miRBase entry: ptr-mir-6130

Stem-loop ptr-mir-6130


Accession
MI0021265
Description
Pan troglodytes ptr-mir-6130 precursor miRNA
Gene family
MIPF0001413; mir-6130


Sequence

caaugaauguggaaaugcaggcaucccuucuauauacugauuuaauuuuccuuggauuuauaugcaguacUGAGGGAGUGGAUUGUAUGguaguucuauuuuuacauuu
....(((((((((((((((.(((((((((((.(((((((....(((((.....)))))......))))).)).))))).))).))).)).......)))))))))))))

Structure
caau             -------  g   -   -     a  -     --auuu     u 
    gaauguggaaaug       ca gca ucc cuucu ua uacug      aauuu c
    |||||||||||||       || ||| ||| ||||| || |||||      ||||| c
    uuuacauuuuuau       GU UGU AGG GAGGG GU augac      uuagg u
----             cuugaug  A   U   U     A  c     guauau     u 


Annotation confidence Not enough data
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Genome context
chr21: 9576829-9576937 [+]

Database links

Mature ptr-miR-6130

Accession MIMAT0024604
Description Pan troglodytes ptr-miR-6130 mature miRNA
Sequence 71 - UGAGGGAGUGGAUUGUAUG - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22454130
    Transcription factors are targeted by differentially expressed miRNAs in primates
    "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
    "Genome Biol Evol (2012) 4:552-564