miRBase entry: ptr-mir-6133

Stem-loop ptr-mir-6133


Accession
MI0021268
Description
Pan troglodytes ptr-mir-6133 precursor miRNA
Gene family
MIPF0001415; mir-6133


Sequence

ggaaugucaccuguguguuuucucugcaugcccucuucauuguucugcugaagacuggucucuucaugugUGAGGGAGGAGGUUGGGUAuugagggaaaacagggggc
.....(((.(((...((((((((((..((((((.((((.((.((((((((((((......)))))).))).))).)).))))..))))))..))))))))))))))))

Structure
ggaau   a   gug          gc      -u    a  g   -   -      cu 
     guc ccu   uguuuucucu  augccc  cuuc uu uuc ugc ugaaga  g
     ||| |||   ||||||||||  ||||||  |||| || ||| ||| ||||||   
     cgg ggg   acaaaaggga  uAUGGG  GGAG AG GAG gug acuucu  g
-----   -   ---          gu      UU    G  G   U   u      cu 


Annotation confidence Not enough data
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Genome context
chr7: 137860891-137860998 [+]

Database links

Mature ptr-miR-6133

Accession MIMAT0024607
Description Pan troglodytes ptr-miR-6133 mature miRNA
Sequence 71 - UGAGGGAGGAGGUUGGGUA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22454130
    Transcription factors are targeted by differentially expressed miRNAs in primates
    "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
    "Genome Biol Evol (2012) 4:552-564