miRBase entry: ptr-mir-3154

Stem-loop ptr-mir-3154


Accession
MI0021269
Description
Pan troglodytes ptr-mir-3154 precursor miRNA
Gene family
MIPF0001387; mir-3154


Sequence

ggccggcccccuccucaggccccuccuucucagccccagcucccgcucaccccugccacgucaaaggaggCAGAAGGGGAGUUGGGAGCagagaggggaccacgggcug
((((((((.........))))..((((((((.((((((((((((.((.....(((((.(......)..))))).)))))))))))).)).))))))))......)))).

Structure
-    ggcccccuccucaggcccc        a  -          g  caccc     -a gu 
 ggcc                   uccuucuc gc cccagcuccc cu     cugcc  c  c
 ||||                   |||||||| || |||||||||| ||     |||||  |   
 ucgg                   ggggagag CG GGGUUGAGGG GA     GACgg  g  a
g    -------------gcacca        a  A          -  ----A     ag aa 


Annotation confidence Not enough data
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Genome context
chr9: 106385956-106386064 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-3154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-3154

Accession MIMAT0024608
Description Pan troglodytes ptr-miR-3154 mature miRNA
Sequence 71 - CAGAAGGGGAGUUGGGAGC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22454130
    Transcription factors are targeted by differentially expressed miRNAs in primates
    "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
    "Genome Biol Evol (2012) 4:552-564