miRBase entry: pgi-MIR482b

Stem-loop pgi-MIR482b


Accession
MI0021291
Description
Panax ginseng pgi-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
1 open access papers mention pgi-MIR482b
(9 sentences)

Sequence

auuuuUCUUGCCAAUUCCUCCCAUUCCaaugguuucaugagguuacuccuuuuccuaucauauccuuguaacccaacacccccauaacguguucgacagagagagagggaaagggagauagaucuagaugaaguuguuuggaugggugauuuggaaagaaaagu
(((((((((.((((.((..(((((((.(((((((((((.(((((.(((((((((((.((...((.((((.....(((((.........)))))..)))).))..)))))))))))))...)))))..))))))))))).))))))).)).)))).)))))))))

Structure
         G    U  CU       C           -g     --a           a  aua  c    aaccc     ccc 
auuuuUCUU CCAA UC  CCCAUUC aaugguuucau  agguu   cuccuuuuccu uc   uc uugu     aacac   c
||||||||| |||| ||  ||||||| |||||||||||  |||||   ||||||||||| ||   || ||||     |||||   a
ugaaaagaa gguu ag  ggguagg uuguugaagua  ucuag   gagggaaaggg ag   ag gaca     uugug   u
         a    u  -u       u           ga     aua           -  -ag  a    ---gc     caa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pgi-miR482b

Accession MIMAT0027239
Description Panax ginseng pgi-miR482b mature miRNA
Sequence 6 - UCUUGCCAAUUCCUCCCAUUCC - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22962612
    High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
    Wu B, Wang M, Ma Y, Yuan L, Lu S
    PLoS One (2012) 7:e44385