miRBase entry: pgi-MIR2118

Stem-loop pgi-MIR2118


Accession
MI0021292
Description
Panax ginseng pgi-MIR2118 precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
1 open access papers mention pgi-MIR2118
(22 sentences)

Sequence

gagaggaguaagugggaaagggagauagaucuagaugaaguuguuuggaugggugauuuggaaagaaaaguuuuguguagauacuugaaagaaauucUUUCCUAUUCCACCCAUCCCAUugauuuccucuggcuccuccccuucccuuucuuuuccuguu
((.(((((.(((.(((((.(((((...((.(((((.(((((((...(((((((((....((((((((...((((..((....))..))))....)))))))).....)))))))))...))))))).))))).))))))).)))))...)))))))).))

Structure
  g     u   --u     a     aua  u     u       uuu         -auuu        -aag    gu  a 
ga aggag aag   gggaa gggag   ga cuaga gaaguug   ggaugggug     ggaaagaa    uuuu  gu g
|| ||||| |||   ||||| |||||   || ||||| |||||||   |||||||||     ||||||||    ||||  ||  
uu uccuu uuc   cccuu cccuc   cu ggucu cuuuagu   CCUACCCAC     CCUUUcuu    aaag  ca a
  g     -   uuu     c     ---  c     c       UAC         CUUAU        aaag    uu  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pgi-miR2118

Accession MIMAT0027240
Description Panax ginseng pgi-miR2118 mature miRNA
Sequence 98 - UUUCCUAUUCCACCCAUCCCAU - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22962612
    High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
    Wu B, Wang M, Ma Y, Yuan L, Lu S
    PLoS One (2012) 7:e44385