Stem-loop pgi-MIR6135c

Accession

MI0021295

Description

Panax ginseng pgi-MIR6135c precursor miRNA

Gene family

MIPF0001644; MIR6135

Literature search

1 open access papers mention pgi-MIR6135c
(4 sentences)

Sequence

aaguuuauuuuuGGGUAAGUUGGUCAAUUGACcaauagaguauuaacauguaggcgagacuuuauguguguuaauauuuuacugaccaauugaucaacuuacccaaaaaaacuu
((((((..((((((((((((((((((((((..((.(((((((((((((((((((......)))))..)))))))))))))).))..))))))))))))))))))))))))))))

Structure

      au                      AC  a              --     cg 
aaguuu  uuuuGGGUAAGUUGGUCAAUUG  ca uagaguauuaacau  guagg  a
||||||  ||||||||||||||||||||||  || ||||||||||||||  |||||   
uucaaa  aaaacccauucaacuaguuaac  gu auuuuauaauugug  uauuu  g
      --                      ca  c              ug     ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135c

• Accession: MIMAT0027243
• Description: Panax ginseng pgi-miR6135c mature miRNA
• Sequence: 13 - GGGUAAGUUGGUCAAUUGAC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385