Stem-loop pgi-MIR6135d

Accession

MI0021296

Description

Panax ginseng pgi-MIR6135d precursor miRNA

Gene family

MIPF0001644; MIR6135

Literature search

1 open access papers mention pgi-MIR6135d
(4 sentences)

Sequence

gguuaguaugaaguuuauuuuuGGGUAAGUUGGUCAAUUGACcaauagaauaaugacacgcaggugagguuguaugugugucaguauucuauuggccaauuaaucaacuuacuuaaaaaaauaacuucaugcuaacc
(((((((((((((((..(((((((((((((((((.(((((.(((((((((((.(((((((((............))))))))).))))))))))).))))).)))))))))))))))))...)))))))))))))))

Structure

               -ua                 C     A           a         gguga 
gguuaguaugaaguu   uuuuuGGGUAAGUUGGU AAUUG Ccaauagaaua ugacacgca     g
|||||||||||||||   ||||||||||||||||| ||||| ||||||||||| |||||||||      
ccaaucguacuucaa   aaaaauucauucaacua uuaac gguuaucuuau acugugugu     g
               uaa                 a     c           g         auguu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135d

• Accession: MIMAT0027244
• Description: Panax ginseng pgi-miR6135d mature miRNA
• Sequence: 23 - GGGUAAGUUGGUCAAUUGAC - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385