miRBase entry: pgi-MIR6135e

Stem-loop pgi-MIR6135e


Accession
MI0021297
Description
Panax ginseng pgi-MIR6135e precursor miRNA
Gene family
MIPF0001644; MIR6135

Literature search
1 open access papers mention pgi-MIR6135e
(12 sentences)

Sequence

augggaagugguuagcaugaaguuuauuuuGGGUAAGUUGGUCAAUUGACUAAUAGAAUACUGACACgcaggcgaguucuauguguguaguauuuauuggcucaauugaccaacuuacaaaaaaauaacuucaugcuaaccggaucccau
((((((..((((((((((((((((..((((..(((((((((((((((((((((((((.(((((.((((((...........))))))))))))))))))).)))))))))))))))))..))))..))))))))))))))))..))))))

Structure
      ag                ua    GG                 -        A     A      ggcg 
auggga  ugguuagcaugaaguu  uuuu  GUAAGUUGGUCAAUUGA CUAAUAGA UACUG CACgca    a
||||||  ||||||||||||||||  ||||  ||||||||||||||||| |||||||| ||||| ||||||    g
uacccu  gccaaucguacuucaa  aaaa  cauucaaccaguuaacu gguuauuu augau gugugu    u
      ag                ua    aa                 c        -     -      aucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pgi-miR6135e-5p

Accession MIMAT0027245
Description Panax ginseng pgi-miR6135e-5p mature miRNA
Sequence 31 - GGGUAAGUUGGUCAAUUGAC - 50
Evidence experimental
Illumina [1]

Mature pgi-miR6135e.2-5p

Accession MIMAT0027246
Description Panax ginseng pgi-miR6135e.2-5p mature miRNA
Sequence 44 - AAUUGACUAAUAGAAUACUGACAC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22962612
    High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
    Wu B, Wang M, Ma Y, Yuan L, Lu S
    PLoS One (2012) 7:e44385