Stem-loop pgi-MIR6135f

Accession

MI0021298

Description

Panax ginseng pgi-MIR6135f precursor miRNA

Gene family

MIPF0001644; MIR6135

Literature search

1 open access papers mention pgi-MIR6135f
(3 sentences)

Sequence

augaauuuuauuuuuGAGUAAGUUGGUCAAUUGGCuaauagaaugcugacacacauagagcuucgccagcgugucagcacucuauugaucaaaugacuaauuuacucaaaaaugaacuucau
(((((.(((((((((((((((((((((((.((((.(((((((.(((((((((.(...(.((...))).).))))))))).))))))).)))).))))))))))))))))))))))).)))))

Structure

     u                       A    C       a         a aua a  u 
augaa uuuauuuuuGAGUAAGUUGGUCA UUGG uaauaga ugcugacac c   g gc  
||||| ||||||||||||||||||||||| |||| ||||||| ||||||||| |   | || u
uacuu aaguaaaaacucauuuaaucagu aacu guuaucu acgacugug g   c cg  
     c                       a    a       c         c --a -  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135f

• Accession: MIMAT0027247
• Description: Panax ginseng pgi-miR6135f mature miRNA
• Sequence: 16 - GAGUAAGUUGGUCAAUUGGC - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385