Stem-loop pgi-MIR6136a

Accession

MI0021304

Description

Panax ginseng pgi-MIR6136a precursor miRNA

Gene family

MIPF0001741; MIR6136

Literature search

1 open access papers mention pgi-MIR6136a
(16 sentences)

Sequence

uauauacuuauuuuacucacccgugcucaucucuuuagacgacgguuucggucauacaaccaucauuuauacuuuuagcgacgcuauauguuguccgucgacuaaaaguaUAGACGACGGUUGUAUGACCGaaacgucgccuaaagggagguuagcACGGGUGAGUAAGAUAAGGGGUAUg
(((((.(((((((((((((((((((((..(((((((((.(((((.((((((((((((((((.((.((((((((((((((((((............))))).))))))))))))).)).))))))))))))))))))))).)))))))))....)))))))))))))))))))))..)))))

Structure

     -a                     --ca         a     g                a  a             -     cuaua 
uauau  cuuauuuuacucacccgugcu    ucucuuuag cgacg uuucggucauacaacc uc uuuauacuuuuag cgacg     u
|||||  |||||||||||||||||||||    ||||||||| ||||| |||||||||||||||| || ||||||||||||| |||||      
gUAUG  GAAUAGAAUGAGUGGGCAcga    agggaaauc gcugc aaaGCCAGUAUGUUGG AG AGAUaugaaaauc gcugc     g
     GG                     uugg         c     -                C  C             a     cuguu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6136a.1

• Accession: MIMAT0027253
• Description: Panax ginseng pgi-miR6136a.1 mature miRNA
• Sequence: 111 - UAGACGACGGUUGUAUGACCG - 131
• Evidence: experimental ; Illumina [1]

Mature pgi-miR6136a.2

• Accession: MIMAT0027254
• Description: Panax ginseng pgi-miR6136a.2 mature miRNA
• Sequence: 157 - ACGGGUGAGUAAGAUAAGGGGUAU - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385