miRBase entry: pgi-MIR6135k

Stem-loop pgi-MIR6135k


Accession
MI0021306
Description
Panax ginseng pgi-MIR6135k precursor miRNA
Gene family
MIPF0001644; MIR6135

Literature search
1 open access papers mention pgi-MIR6135k
(5 sentences)

Sequence

uacggaucugguuauuaugaaguuaauuucaugauaaguuggucaauugaccaauauaguguugacaugcagacaaagagauuacuuucugucugCGUGUCGAUACUGUAUUGGUuaauuaaucaaaguuaacuucaugcuaaucauuuccgug
((((((..((((((.((((((((((((((..........((((.(((((((((((((((((((((((((((((((.((((....)))).))))))))))))))))))))))))))))))).)))))))))))))))))).))))))..))))))

Structure
      uc      u              caugauaagu    c                               a    a 
uacgga  ugguua uaugaaguuaauuu          uggu aauugaccaauauaguguugacaugcagaca agag u
||||||  |||||| ||||||||||||||          |||| ||||||||||||||||||||||||||||||| ||||  
gugccu  acuaau guacuucaauugaa          acua uuaauUGGUUAUGUCAUAGCUGUGCgucugu uuuc u
      uu      c              ----------    a                               c    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pgi-miR6135k

Accession MIMAT0027256
Description Panax ginseng pgi-miR6135k mature miRNA
Sequence 96 - CGUGUCGAUACUGUAUUGGU - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22962612
    High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
    Wu B, Wang M, Ma Y, Yuan L, Lu S
    PLoS One (2012) 7:e44385