Stem-loop pgi-MIR6140a

Accession

MI0021311

Description

Panax ginseng pgi-MIR6140a precursor miRNA

Gene family

MIPF0001666; MIR6140

Literature search

2 open access papers mention pgi-MIR6140a
(7 sentences)

Sequence

gaguaaugcuacauacacaaacuauucuacaaacauuuuacaaauuguugaugugacauacuccacaucaacauauugaucaacaaauugcuucacuguagucuuucgggccccacacaauaugaugcgauggaauaugccacaucagcaguuuauaaAAUGUUUGUAGAAUAGUUUGUGUCucuagcauuuuuc
(((.(((((((...((((((((((((((((((((((((((.((((((((((((((.((((.((((...((.(((((((..........(((......)))((((...))))......))))))).))...)))).)))).)))))))))))))).))))))))))))))))))))))))))...))))))).)))

Structure

   u       cau                          c              a    c    cau  a       aucaacaaauugcuucacugua    u 
gag aaugcua   acacaaacuauucuacaaacauuuua aaauuguugaugug caua ucca   ca cauauug                      gucu  
||| |||||||   |||||||||||||||||||||||||| |||||||||||||| |||| ||||   || |||||||                      |||| u
cuu uuacgau   UGUGUUUGAUAAGAUGUUUGUAAaau uuugacgacuacac guau aggu   gu guauaac                      cggg  
   u       cuC                          a              c    a    agc  a       ----------------acaccc    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6140a

• Accession: MIMAT0027261
• Description: Panax ginseng pgi-miR6140a mature miRNA
• Sequence: 159 - AAUGUUUGUAGAAUAGUUUGUGUC - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385