Stem-loop pgi-MIR6140b

Accession

MI0021312

Description

Panax ginseng pgi-MIR6140b precursor miRNA

Gene family

MIPF0001666; MIR6140

Literature search

1 open access papers mention pgi-MIR6140b
(3 sentences)

Sequence

uuuaaaugaauaaugcuagagacacaaacuauucugcaaauauuuuacaaauugcugauguggcauucuccaccucagcuuuuuauguggggccaaagacuacauugcaacaauuuguugaucaauauguugaggguguaguaugucacaucaguaaAAUGUUUGUAGAAUAAUUUGUGUAgguagcauuacucuuuaaa
.(((((.((.((((((((...(((((((.((((((((((((((((.......((((((((((((((.((.(((((((((.....((((((.........))))))..(((((...)))))........))))).)))).)).)))))))))))))))))))))))))))))).)))))))...)))))))).))))))).

Structure

u     u  a        gag       c                uacaaau              u  c    -     ------------------uuuuu      ggc 
 uuaaa ga uaaugcua   acacaaa uauucugcaaauauuu       ugcugauguggcau cu cacc ucagc                       augugg   c
 ||||| || ||||||||   ||||||| ||||||||||||||||       |||||||||||||| || |||| |||||                       ||||||   a
 aauuu cu auuacgau   UGUGUUU AUAAGAUGUUUGUAAa       augacuacacugua ga gugg aguug                       uacauc   a
a     -  c        ggA       A                -------              u  u    g     uauaacuaguuguuuaacaacgu      aga 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6140b

• Accession: MIMAT0027262
• Description: Panax ginseng pgi-miR6140b mature miRNA
• Sequence: 158 - AAUGUUUGUAGAAUAAUUUGUGUA - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385