Stem-loop pgi-MIR6140c

Accession

MI0021313

Description

Panax ginseng pgi-MIR6140c precursor miRNA

Gene family

MIPF0001666; MIR6140

Literature search

1 open access papers mention pgi-MIR6140c
(4 sentences)

Sequence

acacaaacuauuugacaaacauuuuacaaacugcugauguagcauauuccacuucaacauauuguguuggaccgaagacuauauugaaacaauuuguugaucaauacGCUGAGGUGGAGUAUGCCACAUCagcaguuuauaaaauauuuauaaaauaguuugugu
(((((((((((((...(((.((((((.(((((((((((((.(((((((((((((((......((((((((......(((...((((...))))..)))..)))))))).))))))))))))))).))))))))))))).)))))).)))...)))))))))))))

Structure

             gac   c      c             a               acauau        accgaa   uau    a 
acacaaacuauuu   aaa auuuua aaacugcugaugu gcauauuccacuuca      uguguugg      gac   auug  
|||||||||||||   ||| |||||| ||||||||||||| |||||||||||||||      ||||||||      |||   |||| a
uguguuugauaaa   uuu uaaaau uuugacgaCUACA CGUAUGAGGUGGAGU      Gcauaacu      uug   uaac  
             aua   a      a             C               -----C        ----ag   -uu    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6140c

• Accession: MIMAT0027263
• Description: Panax ginseng pgi-miR6140c mature miRNA
• Sequence: 108 - GCUGAGGUGGAGUAUGCCACAUC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385