Stem-loop pgi-MIR6140d

Accession

MI0021314

Description

Panax ginseng pgi-MIR6140d precursor miRNA

Gene family

MIPF0001666; MIR6140

Literature search

1 open access papers mention pgi-MIR6140d
(7 sentences)

Sequence

caaauCGUUGAUGUGGCAUACUUCACCucaucauauugugugggguugaaaacuacauugaaacaauuuguuaaucaauauauugagguggaauaugccacaucagcaguuua
.((((.((((((((((((((.(((((((((..(((((((((((.........)))))..................))))))..))))))))).)))))))))))))).)))).

Structure

c    C              C         uc      ------------------     ggu 
 aaau GUUGAUGUGGCAUA UUCACCuca  auauug                  ugugg   u
 |||| |||||||||||||| |||||||||  ||||||                  |||||   g
 uuug cgacuacaccguau agguggagu  uauaac                  acauc   a
a    a              a         ua      uaauuguuuaacaaaguu     aaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6140d

• Accession: MIMAT0027264
• Description: Panax ginseng pgi-miR6140d mature miRNA
• Sequence: 6 - CGUUGAUGUGGCAUACUUCACC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385